Bondrup-Nielsen, S., K. Beazley, G. Bissix, D. Colville, S. Flemming, T. Herman, M. McPherson, S. Mockford, and S. O’Grady (Editors). 2010. Ecosystem-based Management: Beyond Boundaries. Proceedings of the Sixth International Conference on Science and Management of Protected Areas, 21-26 May 2007, Wolfville, Nova Scotia, Canada. Science and Management of Protected Areas Association, Wolfville, NS.
McPherson, M., C.Nielsen, and K. Proudlock. 2009. The Development of Tier1 Generalized Habitat-based Standards for Ecozones in Agricultural Regions of Canada. National Agri-Environmental Standards Initiative Synthesis Report No. 3. Environment Canada. Gatineau, Quebec. 137 p.
M. McPherson, 2006. Integrated vegetation management for the Thousand Islands Ecosystem and St. Lawrence Islands National Park. Parks Canada. 118p.
M.McPherson, 2005. Re-assessment of ecosystem stresses for St. Lawrence Islands National Park and the Thousand Islands Ecosystem. Parks Canada. 44p.
M. McPherson, 2005. Special Management Zones for Newfoundland marten in the Terra Nova and Gros Morne Greater Ecosystems: Strategies for ecosystem management and education. Parks Canada.
Taylor, P.D. and M. McPherson, 2004. Long-term monitoring of Listera australis at a proposed White Rock quartz mine in Yarmouth County: Report on 2004 results. For Black Bull Resources, Ltd., Nova Scotia. 45 p.
McPherson, A.M. 2004. Between-patch movements of a peatland dragonfly (Leucorrhinia hudsonica), and the influence of landscape structure on its distribution and abundance in western Newfoundland. Acadia University, Wolfville, NS. 82 pp.
Stewart, D.T., M. McPherson, J. Robichaud, and L. Fumagalli. 2003. Are there two species of pygmy shrews? Revisiting the question using mitochondrial DNA cytochrome b sequence data. Canadian Field-Naturalist, 117 (1): 82-88.
Krawchuk, M.A. and M. McPherson, 2002. A review of landscape connectivity and adaptive management for the Greater Gros Morne Ecosystem. Under contract to the Connectivity Working Group of the GGME, NL. 62 p.
McPherson, M, A.W. Shostak, and W.M. Samuel. 2000. Climbing simulated vegetation to heights of ungulate hosts by larvae of Dermacentor albipictus (Packard) (Acari:Ixodidae). Journal of Medical Entomology, 37(1): 114-120.